Showing : gene set testing • reset
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Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
5.4 years ago svlachavas ▴ 840
4
votes
11
replies
4.1k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 6.2 years ago by ★ 3.4k • written 6.2 years ago by ▴ 10
2
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3
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1.9k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma agilent microarrays mroast fry gene tests gene set testing
updated 7.4 years ago by 53k • written 7.4 years ago by ▴ 840
7
votes
2
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2.2k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 7.5 years ago by 53k • written 7.5 years ago by ▴ 60
1
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4
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1.9k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
7.5 years ago Andrea Carenzo • 0
0
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1
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1.9k
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GAGE function and the same.dir option
gage gene set testing
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by ▴ 20
2
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4
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2.5k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
updated 22 months ago by ▴ 20 • written 9.2 years ago by ▴ 190
4
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6
replies
2.6k
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Gene set Testing with Limma for Agilent IDs probes?
limma agilent microarrays gene set testing annotation
9.1 years ago Bouzid.a ▴ 20
7
votes
13
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3.6k
views
Test whether expression levels of two gene sets are significantly different
R DESeq2 gene set testing gene expression
9.3 years ago Jon Bråte ▴ 270
3
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4
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2.3k
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Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 20
1
vote
0
replies
2.0k
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Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea ncrna coexpression gene set analysis gene set testing
9.8 years ago m.fletcher ▴ 20
1
vote
5
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2.8k
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Confused by results from CAMERA gene set testing
limma camera gene set testing
9.9 years ago claire.n.levy ▴ 10
7
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6
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3.9k
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Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma mroast barcodeplot KEGG gene set testing
updated 10.3 years ago by 53k • written 10.3 years ago by ▴ 840
6
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10
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2.7k
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Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing roast mroast differential gene expression bioconductor
10.8 years ago svlachavas ▴ 840
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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